Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 AC144831.1-201ENST00000573312 2656 ntBASIC14.06□□□□□ -0.16
SKA3Q8IX90 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 PRAL-201ENST00000624952 3286 ntBASIC14.05□□□□□ -0.16
SKA3Q8IX90 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 AC092183.1-201ENST00000469884 875 ntBASIC14.05□□□□□ -0.16
SKA3Q8IX90 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SKA3Q8IX90 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.05□□□□□ -0.16
SKA3Q8IX90 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 KRT8P37-201ENST00000451609 1420 ntBASIC14.04□□□□□ -0.16
SKA3Q8IX90 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 AL009178.2-201ENST00000597278 2719 ntBASIC14.04□□□□□ -0.16
SKA3Q8IX90 AC006058.4-201ENST00000624016 1670 ntBASIC14.04□□□□□ -0.16
SKA3Q8IX90 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SKA3Q8IX90 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SKA3Q8IX90 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 262.9 ms