Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 FAM197Y8-203ENST00000450145 560 ntBASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 AC108751.1-201ENST00000490852 363 ntBASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 TPM1-226ENST00000560959 925 ntTSL 2 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 AC243562.2-201ENST00000561247 970 ntBASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.77■□□□□ 0.12
NUDCD3Q8IVD9 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 AC148477.4-201ENST00000613430 1793 ntBASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.77■□□□□ 0.11
NUDCD3Q8IVD9 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 AC232323.1-201ENST00000540724 2099 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 REXO1L5P-201ENST00000622260 2098 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 VN2R19P-201ENST00000442399 1052 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 AC018712.1-201ENST00000455767 687 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 PRYP6-201ENST00000514804 343 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 IFNL4P1-201ENST00000607083 540 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 AL390755.1-201ENST00000623716 2027 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 LINC00528-201ENST00000600723 2160 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 LINC00552-201ENST00000625151 2579 ntBASIC15.76■□□□□ 0.11
NUDCD3Q8IVD9 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
NUDCD3Q8IVD9 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NUDCD3Q8IVD9 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NUDCD3Q8IVD9 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NUDCD3Q8IVD9 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NUDCD3Q8IVD9 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NUDCD3Q8IVD9 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NUDCD3Q8IVD9 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.75■□□□□ 0.11
NUDCD3Q8IVD9 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.75■□□□□ 0.11
NUDCD3Q8IVD9 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms