Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AL603832.2-201ENST00000566195 2125 ntBASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 ZBTB12BP-201ENST00000314232 1122 ntBASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 GZMB-202ENST00000382540 816 ntTSL 5 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 AL133267.1-201ENST00000398220 340 ntBASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 FO681548.1-201ENST00000455617 1132 ntBASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 AC108725.1-201ENST00000495472 409 ntBASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 AC009090.5-201ENST00000624886 2285 ntBASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 AC016694.1-201ENST00000434179 700 ntBASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.27■□□□□ 0.52
SHROOM1Q2M3G4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
SHROOM1Q2M3G4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 PRORSD1P-202ENST00000563365 2154 ntBASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 ZNF767P-206ENST00000513792 565 ntBASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 RPL8-205ENST00000527914 551 ntTSL 3 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 RN7SL219P-201ENST00000582872 296 ntBASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 MIR6869-201ENST00000619434 62 ntBASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.26■□□□□ 0.51
SHROOM1Q2M3G4 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms