Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 AL080243.2-201ENST00000418783 582 ntBASIC15.26■□□□□ 0.03
PCDH1Q08174 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH1Q08174 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 HLA-V-204ENST00000476601 1289 ntBASIC15.26■□□□□ 0.03
PCDH1Q08174 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH1Q08174 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH1Q08174 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH1Q08174 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH1Q08174 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH1Q08174 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH1Q08174 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH1Q08174 SNHG9-202ENST00000564014 471 ntBASIC15.26■□□□□ 0.03
PCDH1Q08174 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.26■□□□□ 0.03
PCDH1Q08174 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH1Q08174 MIR6080-201ENST00000617359 66 ntBASIC15.26■□□□□ 0.03
PCDH1Q08174 LINC00628-201ENST00000628516 1289 ntBASIC15.26■□□□□ 0.03
PCDH1Q08174 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH1Q08174 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 AC067930.6-201ENST00000623257 4947 ntBASIC15.26■□□□□ 0.03
PCDH1Q08174 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PCDH1Q08174 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH1Q08174 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 PRAL-201ENST00000624952 3286 ntBASIC15.26■□□□□ 0.03
PCDH1Q08174 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH1Q08174 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PCDH1Q08174 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.26■□□□□ 0.03
PCDH1Q08174 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDH1Q08174 Z97205.2-201ENST00000564697 1639 ntBASIC15.25■□□□□ 0.03
PCDH1Q08174 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
PCDH1Q08174 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 AC136621.1-201ENST00000624017 2304 ntBASIC15.25■□□□□ 0.03
PCDH1Q08174 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 AL139400.1-201ENST00000366220 510 ntBASIC15.25■□□□□ 0.03
PCDH1Q08174 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDH1Q08174 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDH1Q08174 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDH1Q08174 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDH1Q08174 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDH1Q08174 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDH1Q08174 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PCDH1Q08174 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PCDH1Q08174 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDH1Q08174 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDH1Q08174 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PCDH1Q08174 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
PCDH1Q08174 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDH1Q08174 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
PCDH1Q08174 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDH1Q08174 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH1Q08174 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms