Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USP46P62068 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.65■□□□□ 0.26
USP46P62068 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.65■□□□□ 0.26
USP46P62068 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP46P62068 AL358472.5-202ENST00000641448 1267 ntBASIC16.65■□□□□ 0.26
USP46P62068 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP46P62068 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP46P62068 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
USP46P62068 AC138969.3-201ENST00000546612 1459 ntBASIC16.65■□□□□ 0.26
USP46P62068 AC138932.2-201ENST00000548268 1459 ntBASIC16.65■□□□□ 0.26
USP46P62068 AC126755.4-201ENST00000549796 1459 ntBASIC16.65■□□□□ 0.26
USP46P62068 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP46P62068 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USP46P62068 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP46P62068 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.65■□□□□ 0.26
USP46P62068 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.65■□□□□ 0.26
USP46P62068 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP46P62068 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.65■□□□□ 0.26
USP46P62068 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP46P62068 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
USP46P62068 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
USP46P62068 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.64■□□□□ 0.26
USP46P62068 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
USP46P62068 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.64■□□□□ 0.25
USP46P62068 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 CYP2T1P-202ENST00000641596 2535 ntBASIC16.64■□□□□ 0.25
USP46P62068 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
USP46P62068 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.64■□□□□ 0.25
USP46P62068 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.64■□□□□ 0.25
USP46P62068 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.64■□□□□ 0.25
USP46P62068 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.64■□□□□ 0.25
USP46P62068 MYCLP2-201ENST00000449268 967 ntBASIC16.64■□□□□ 0.25
USP46P62068 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC16.64■□□□□ 0.25
USP46P62068 ELK1P1-201ENST00000485699 580 ntBASIC16.64■□□□□ 0.25
USP46P62068 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.64■□□□□ 0.25
USP46P62068 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.64■□□□□ 0.25
USP46P62068 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.64■□□□□ 0.25
USP46P62068 AC123567.1-201ENST00000548294 1261 ntBASIC16.64■□□□□ 0.25
USP46P62068 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC16.64■□□□□ 0.25
USP46P62068 AC099568.2-201ENST00000609194 695 ntBASIC16.64■□□□□ 0.25
USP46P62068 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP46P62068 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 AL607033.1-201ENST00000623900 1599 ntBASIC16.64■□□□□ 0.25
USP46P62068 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
USP46P62068 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
USP46P62068 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP46P62068 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP46P62068 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USP46P62068 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP46P62068 AC069224.1-201ENST00000566372 1715 ntBASIC16.63■□□□□ 0.25
USP46P62068 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP46P62068 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
USP46P62068 MEP1AP4-201ENST00000423244 1087 ntBASIC16.63■□□□□ 0.25
USP46P62068 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.63■□□□□ 0.25
USP46P62068 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.63■□□□□ 0.25
USP46P62068 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.63■□□□□ 0.25
USP46P62068 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.63■□□□□ 0.25
USP46P62068 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP46P62068 RARRES2P5-201ENST00000564013 466 ntBASIC16.63■□□□□ 0.25
USP46P62068 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
USP46P62068 AL158212.4-201ENST00000624062 1286 ntBASIC16.63■□□□□ 0.25
USP46P62068 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USP46P62068 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.63■□□□□ 0.25
USP46P62068 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.63■□□□□ 0.25
USP46P62068 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.63■□□□□ 0.25
USP46P62068 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
USP46P62068 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP46P62068 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.63■□□□□ 0.25
USP46P62068 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP46P62068 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.63■□□□□ 0.25
USP46P62068 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms