Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
FOXA3P55318 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 NME2-201ENST00000393183 568 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC11.95□□□□□ -0.5
FOXA3P55318 AL596275.1-201ENST00000423464 877 ntBASIC11.95□□□□□ -0.5
FOXA3P55318 CHCHD2P8-201ENST00000429873 447 ntBASIC11.95□□□□□ -0.5
FOXA3P55318 AL671277.2-201ENST00000458060 996 ntBASIC11.95□□□□□ -0.5
FOXA3P55318 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
FOXA3P55318 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 NTF6B-201ENST00000591913 560 ntBASIC11.95□□□□□ -0.5
FOXA3P55318 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC11.95□□□□□ -0.5
FOXA3P55318 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 AL137784.3-201ENST00000623858 2288 ntBASIC11.94□□□□□ -0.5
FOXA3P55318 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 INTS4P1-203ENST00000641008 3683 ntBASIC11.94□□□□□ -0.5
FOXA3P55318 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC11.94□□□□□ -0.5
FOXA3P55318 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 SLC25A6P2-201ENST00000497974 877 ntBASIC11.94□□□□□ -0.5
FOXA3P55318 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC11.94□□□□□ -0.5
FOXA3P55318 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC11.94□□□□□ -0.5
FOXA3P55318 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 AL022326.1-202ENST00000641533 845 ntBASIC11.94□□□□□ -0.5
FOXA3P55318 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC11.94□□□□□ -0.5
FOXA3P55318 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
FOXA3P55318 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC11.94□□□□□ -0.5
FOXA3P55318 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms