Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH6P55285 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.48■□□□□ 0.23
CDH6P55285 AP002414.2-201ENST00000591780 3365 ntBASIC16.47■□□□□ 0.23
CDH6P55285 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
CDH6P55285 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.47■□□□□ 0.23
CDH6P55285 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CDH6P55285 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.47■□□□□ 0.23
CDH6P55285 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH6P55285 SPDYE17-201ENST00000412399 783 ntBASIC16.47■□□□□ 0.23
CDH6P55285 TSEN15P1-201ENST00000423257 515 ntBASIC16.47■□□□□ 0.23
CDH6P55285 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH6P55285 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH6P55285 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH6P55285 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CDH6P55285 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.47■□□□□ 0.23
CDH6P55285 AC097359.3-201ENST00000603982 1210 ntBASIC16.47■□□□□ 0.23
CDH6P55285 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH6P55285 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.47■□□□□ 0.23
CDH6P55285 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CDH6P55285 AC127383.1-201ENST00000444697 1800 ntBASIC16.47■□□□□ 0.23
CDH6P55285 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH6P55285 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.46■□□□□ 0.23
CDH6P55285 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.46■□□□□ 0.23
CDH6P55285 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CDH6P55285 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CDH6P55285 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.46■□□□□ 0.23
CDH6P55285 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 AC006538.3-201ENST00000612495 578 ntBASIC16.46■□□□□ 0.23
CDH6P55285 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.46■□□□□ 0.23
CDH6P55285 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
CDH6P55285 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.46■□□□□ 0.23
CDH6P55285 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CDH6P55285 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.46■□□□□ 0.23
CDH6P55285 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH6P55285 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDH6P55285 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CDH6P55285 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDH6P55285 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CDH6P55285 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDH6P55285 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH6P55285 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH6P55285 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH6P55285 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH6P55285 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH6P55285 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.45■□□□□ 0.22
CDH6P55285 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH6P55285 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH6P55285 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.45■□□□□ 0.22
CDH6P55285 AC109322.1-201ENST00000524499 1264 ntBASIC16.45■□□□□ 0.22
CDH6P55285 AC069262.1-201ENST00000539058 672 ntBASIC16.45■□□□□ 0.22
CDH6P55285 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.45■□□□□ 0.22
CDH6P55285 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.45■□□□□ 0.22
CDH6P55285 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms