Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLCN3P51790 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCN3P51790 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
CLCN3P51790 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCN3P51790 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCN3P51790 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCN3P51790 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CLCN3P51790 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLCN3P51790 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLCN3P51790 AC018665.1-201ENST00000622927 1362 ntBASIC17.28■□□□□ 0.36
CLCN3P51790 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.27■□□□□ 0.36
CLCN3P51790 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.27■□□□□ 0.36
CLCN3P51790 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.27■□□□□ 0.36
CLCN3P51790 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.27■□□□□ 0.36
CLCN3P51790 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.27■□□□□ 0.36
CLCN3P51790 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
CLCN3P51790 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 ACTG1P3-201ENST00000431775 1114 ntBASIC17.27■□□□□ 0.36
CLCN3P51790 AC234783.1-201ENST00000441761 496 ntBASIC17.27■□□□□ 0.36
CLCN3P51790 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.27■□□□□ 0.36
CLCN3P51790 AC022210.1-201ENST00000449856 793 ntBASIC17.27■□□□□ 0.36
CLCN3P51790 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CLCN3P51790 SNX29P1-201ENST00000548357 1007 ntBASIC17.27■□□□□ 0.36
CLCN3P51790 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.27■□□□□ 0.36
CLCN3P51790 AC015910.1-201ENST00000579400 975 ntBASIC17.27■□□□□ 0.36
CLCN3P51790 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.27■□□□□ 0.36
CLCN3P51790 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.27■□□□□ 0.36
CLCN3P51790 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
CLCN3P51790 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLCN3P51790 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CLCN3P51790 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CLCN3P51790 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLCN3P51790 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CLCN3P51790 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.27■□□□□ 0.35
CLCN3P51790 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLCN3P51790 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLCN3P51790 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLCN3P51790 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CLCN3P51790 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.26■□□□□ 0.35
CLCN3P51790 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
CLCN3P51790 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.26■□□□□ 0.35
CLCN3P51790 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.26■□□□□ 0.35
CLCN3P51790 AL133267.1-201ENST00000398220 340 ntBASIC17.26■□□□□ 0.35
CLCN3P51790 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.26■□□□□ 0.35
CLCN3P51790 SLC25A47P1-201ENST00000531577 414 ntBASIC17.26■□□□□ 0.35
CLCN3P51790 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.26■□□□□ 0.35
CLCN3P51790 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.26■□□□□ 0.35
CLCN3P51790 CLUHP6-201ENST00000580789 941 ntBASIC17.26■□□□□ 0.35
CLCN3P51790 AC233724.13-201ENST00000598383 410 ntBASIC17.26■□□□□ 0.35
CLCN3P51790 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.26■□□□□ 0.35
CLCN3P51790 MIR6805-201ENST00000615055 62 ntBASIC17.26■□□□□ 0.35
CLCN3P51790 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.26■□□□□ 0.35
CLCN3P51790 DRD5P1-201ENST00000456605 1438 ntBASIC17.26■□□□□ 0.35
CLCN3P51790 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CLCN3P51790 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.26■□□□□ 0.35
CLCN3P51790 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.26■□□□□ 0.35
CLCN3P51790 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLCN3P51790 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CLCN3P51790 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.25■□□□□ 0.35
CLCN3P51790 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.25■□□□□ 0.35
CLCN3P51790 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
CLCN3P51790 MSTO2P-201ENST00000314835 1709 ntBASIC17.25■□□□□ 0.35
CLCN3P51790 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms