Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXC9P31274 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HOXC9P31274 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC9P31274 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HOXC9P31274 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HOXC9P31274 KRT8P13-201ENST00000463294 1010 ntBASIC20.66■□□□□ 0.9
HOXC9P31274 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.66■□□□□ 0.9
HOXC9P31274 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HOXC9P31274 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
HOXC9P31274 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC9P31274 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
HOXC9P31274 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
HOXC9P31274 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 AGER-203ENST00000375065 665 ntTSL 2 BASIC20.65■□□□□ 0.9
HOXC9P31274 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
HOXC9P31274 MPV17-205ENST00000402310 906 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC20.65■□□□□ 0.9
HOXC9P31274 AC104306.2-201ENST00000451877 341 ntBASIC20.65■□□□□ 0.9
HOXC9P31274 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 RPSAP36-202ENST00000494591 1261 ntBASIC20.65■□□□□ 0.9
HOXC9P31274 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC20.65■□□□□ 0.9
HOXC9P31274 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC20.65■□□□□ 0.9
HOXC9P31274 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC20.65■□□□□ 0.9
HOXC9P31274 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
HOXC9P31274 RN7SL48P-201ENST00000579283 293 ntBASIC20.65■□□□□ 0.9
HOXC9P31274 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC20.65■□□□□ 0.9
HOXC9P31274 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HOXC9P31274 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC20.65■□□□□ 0.9
HOXC9P31274 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC9P31274 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.65■□□□□ 0.9
HOXC9P31274 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HOXC9P31274 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.64■□□□□ 0.9
HOXC9P31274 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC9P31274 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC9P31274 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
HOXC9P31274 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
HOXC9P31274 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 BTBD6P1-201ENST00000412176 1267 ntBASIC20.64■□□□□ 0.89
HOXC9P31274 HOMER2P2-201ENST00000451621 847 ntBASIC20.64■□□□□ 0.89
HOXC9P31274 PFN2-205ENST00000461868 613 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXC9P31274 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC20.64■□□□□ 0.89
HOXC9P31274 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC20.64■□□□□ 0.89
HOXC9P31274 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
HOXC9P31274 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXC9P31274 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.64■□□□□ 0.89
HOXC9P31274 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
HOXC9P31274 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.64■□□□□ 0.89
HOXC9P31274 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC9P31274 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
HOXC9P31274 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HOXC9P31274 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms