Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 TP73-AS1-210ENST00000637775 1455 ntBASIC12.33□□□□□ -0.44
CXCL1P09341 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
CXCL1P09341 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC12.33□□□□□ -0.44
CXCL1P09341 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
CXCL1P09341 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 GID4-202ENST00000376345 1391 ntTSL 3 BASIC12.32□□□□□ -0.44
CXCL1P09341 AC243591.1-201ENST00000452967 1364 ntBASIC12.32□□□□□ -0.44
CXCL1P09341 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
CXCL1P09341 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC12.32□□□□□ -0.44
CXCL1P09341 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 AL671277.2-201ENST00000458060 996 ntBASIC12.32□□□□□ -0.44
CXCL1P09341 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC12.32□□□□□ -0.44
CXCL1P09341 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC12.32□□□□□ -0.44
CXCL1P09341 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC12.32□□□□□ -0.44
CXCL1P09341 TK2-213ENST00000563369 882 ntTSL 5 BASIC12.32□□□□□ -0.44
CXCL1P09341 LINC01238-205ENST00000567549 1107 ntBASIC12.32□□□□□ -0.44
CXCL1P09341 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC12.32□□□□□ -0.44
CXCL1P09341 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC12.32□□□□□ -0.44
CXCL1P09341 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC12.32□□□□□ -0.44
CXCL1P09341 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC12.32□□□□□ -0.44
CXCL1P09341 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.32□□□□□ -0.44
CXCL1P09341 AC011474.4-201ENST00000623523 2076 ntBASIC12.32□□□□□ -0.44
CXCL1P09341 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC12.32□□□□□ -0.44
CXCL1P09341 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC12.32□□□□□ -0.44
CXCL1P09341 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC12.32□□□□□ -0.44
CXCL1P09341 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.32□□□□□ -0.44
CXCL1P09341 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
CXCL1P09341 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
CXCL1P09341 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.31□□□□□ -0.44
CXCL1P09341 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.31□□□□□ -0.44
CXCL1P09341 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 KRT8P39-201ENST00000396270 1433 ntBASIC12.31□□□□□ -0.44
CXCL1P09341 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.31□□□□□ -0.44
CXCL1P09341 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
CXCL1P09341 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 AC148477.5-201ENST00000625164 1645 ntBASIC12.31□□□□□ -0.44
CXCL1P09341 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
CXCL1P09341 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
CXCL1P09341 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms