Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 AZGP1P1-201ENST00000411909 902 ntBASIC15.32■□□□□ 0.04
CLDN9O95484 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.32■□□□□ 0.04
CLDN9O95484 GPS2P2-201ENST00000430745 888 ntBASIC15.32■□□□□ 0.04
CLDN9O95484 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
CLDN9O95484 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CLDN9O95484 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.32■□□□□ 0.04
CLDN9O95484 BANF1P1-201ENST00000553684 263 ntBASIC15.32■□□□□ 0.04
CLDN9O95484 HNRNPUP1-201ENST00000554987 333 ntBASIC15.32■□□□□ 0.04
CLDN9O95484 AC026150.2-201ENST00000564693 1156 ntBASIC15.32■□□□□ 0.04
CLDN9O95484 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.32■□□□□ 0.04
CLDN9O95484 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.32■□□□□ 0.04
CLDN9O95484 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.32■□□□□ 0.04
CLDN9O95484 AC097359.3-201ENST00000603982 1210 ntBASIC15.32■□□□□ 0.04
CLDN9O95484 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
CLDN9O95484 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CLDN9O95484 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.32■□□□□ 0.04
CLDN9O95484 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.32■□□□□ 0.04
CLDN9O95484 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CLDN9O95484 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLDN9O95484 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CLDN9O95484 AC006058.4-201ENST00000624016 1670 ntBASIC15.32■□□□□ 0.04
CLDN9O95484 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.31■□□□□ 0.04
CLDN9O95484 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.31■□□□□ 0.04
CLDN9O95484 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 AC211486.1-202ENST00000416371 468 ntBASIC15.31■□□□□ 0.04
CLDN9O95484 AC136604.1-201ENST00000418535 575 ntBASIC15.31■□□□□ 0.04
CLDN9O95484 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.31■□□□□ 0.04
CLDN9O95484 AL645939.2-201ENST00000427340 991 ntBASIC15.31■□□□□ 0.04
CLDN9O95484 SPDYE14P-201ENST00000442619 822 ntBASIC15.31■□□□□ 0.04
CLDN9O95484 AC211476.1-201ENST00000503899 468 ntBASIC15.31■□□□□ 0.04
CLDN9O95484 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.31■□□□□ 0.04
CLDN9O95484 AC007967.4-201ENST00000614700 386 ntBASIC15.31■□□□□ 0.04
CLDN9O95484 AC009093.7-201ENST00000623853 1223 ntBASIC15.31■□□□□ 0.04
CLDN9O95484 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CLDN9O95484 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.31■□□□□ 0.04
CLDN9O95484 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.31■□□□□ 0.04
CLDN9O95484 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
CLDN9O95484 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.31■□□□□ 0.04
CLDN9O95484 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CLDN9O95484 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLDN9O95484 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CLDN9O95484 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CLDN9O95484 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CLDN9O95484 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.3■□□□□ 0.04
CLDN9O95484 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.3■□□□□ 0.04
CLDN9O95484 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CLDN9O95484 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.3■□□□□ 0.04
CLDN9O95484 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN9O95484 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.3■□□□□ 0.04
CLDN9O95484 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.3■□□□□ 0.04
CLDN9O95484 FO393414.2-201ENST00000405153 598 ntBASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms