Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 AC073439.1-201ENST00000624121 1774 ntBASIC15.57■□□□□ 0.08
VPS4BO75351 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.57■□□□□ 0.08
VPS4BO75351 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 GAPDHP21-201ENST00000450301 1010 ntBASIC15.57■□□□□ 0.08
VPS4BO75351 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.57■□□□□ 0.08
VPS4BO75351 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.57■□□□□ 0.08
VPS4BO75351 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS4BO75351 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.57■□□□□ 0.08
VPS4BO75351 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 CICP13-201ENST00000422015 2789 ntBASIC15.57■□□□□ 0.08
VPS4BO75351 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
VPS4BO75351 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
VPS4BO75351 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
VPS4BO75351 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS4BO75351 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS4BO75351 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 TFAMP1-201ENST00000412727 736 ntBASIC15.56■□□□□ 0.08
VPS4BO75351 AL671277.1-201ENST00000429656 993 ntBASIC15.56■□□□□ 0.08
VPS4BO75351 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS4BO75351 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS4BO75351 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.56■□□□□ 0.08
VPS4BO75351 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS4BO75351 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS4BO75351 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS4BO75351 AC027307.3-201ENST00000594262 1100 ntBASIC15.56■□□□□ 0.08
VPS4BO75351 TUBB3P1-201ENST00000405796 1332 ntBASIC15.56■□□□□ 0.08
VPS4BO75351 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 AC105250.1-201ENST00000509378 2057 ntBASIC15.56■□□□□ 0.08
VPS4BO75351 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
VPS4BO75351 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
VPS4BO75351 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS4BO75351 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms