Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 AC025181.2-201ENST00000606994 802 ntBASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC20.41■□□□□ 0.86
TRIM35Q9UPQ4 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 COX5BP8-201ENST00000416911 349 ntBASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 VDAC1P7-201ENST00000462417 847 ntBASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 AC026410.3-201ENST00000514280 936 ntBASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 AL359711.2-201ENST00000563105 872 ntBASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 AC124283.3-201ENST00000570869 594 ntBASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 AL049840.4-201ENST00000602422 811 ntBASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRIM35Q9UPQ4 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM35Q9UPQ4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC20.39■□□□□ 0.86
TRIM35Q9UPQ4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM35Q9UPQ4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM35Q9UPQ4 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM35Q9UPQ4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC20.39■□□□□ 0.86
TRIM35Q9UPQ4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM35Q9UPQ4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM35Q9UPQ4 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRIM35Q9UPQ4 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 AC112693.3-201ENST00000624819 1983 ntBASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM35Q9UPQ4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM35Q9UPQ4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms