Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 GIMAP3P-201ENST00000495150 836 ntBASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CLCF1Q9UBD9 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 AC011270.2-201ENST00000624293 2550 ntBASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 AL442647.2-201ENST00000429864 857 ntBASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 RN7SL837P-201ENST00000463010 287 ntBASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 FAM86LP-201ENST00000478302 853 ntBASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 AC132938.2-201ENST00000579188 680 ntBASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 AL591163.1-201ENST00000641757 987 ntBASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 AC079328.2-201ENST00000561241 3354 ntBASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.04□□□□□ -0.16
CLCF1Q9UBD9 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 CYP2T1P-202ENST00000641596 2535 ntBASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms