Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 TSEN15P1-201ENST00000423257 515 ntBASIC16.37■□□□□ 0.21
PCDH9Q9HC56 SPDYE14P-201ENST00000442619 822 ntBASIC16.37■□□□□ 0.21
PCDH9Q9HC56 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PCDH9Q9HC56 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 AC127383.1-201ENST00000444697 1800 ntBASIC16.36■□□□□ 0.21
PCDH9Q9HC56 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 HLA-J-203ENST00000494367 1087 ntBASIC16.36■□□□□ 0.21
PCDH9Q9HC56 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 AP001059.3-201ENST00000619053 235 ntBASIC16.36■□□□□ 0.21
PCDH9Q9HC56 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 LINC00628-201ENST00000628516 1289 ntBASIC16.36■□□□□ 0.21
PCDH9Q9HC56 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 AL136982.4-201ENST00000437689 1740 ntBASIC16.36■□□□□ 0.21
PCDH9Q9HC56 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDH9Q9HC56 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCDH9Q9HC56 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms