Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.09□□□□□ -0.15
MMP28Q9H239 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MMP28Q9H239 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
MMP28Q9H239 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MMP28Q9H239 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MMP28Q9H239 FGD5P1-202ENST00000614866 2498 ntBASIC14.08□□□□□ -0.15
MMP28Q9H239 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MMP28Q9H239 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MMP28Q9H239 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MMP28Q9H239 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.08□□□□□ -0.15
MMP28Q9H239 PCGF3-213ENST00000620529 1899 ntBASIC14.08□□□□□ -0.16
MMP28Q9H239 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.08□□□□□ -0.16
MMP28Q9H239 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 HIST2H3DP1-201ENST00000401004 416 ntBASIC14.08□□□□□ -0.16
MMP28Q9H239 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
MMP28Q9H239 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.08□□□□□ -0.16
MMP28Q9H239 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 MSRA-206ENST00000521209 814 ntTSL 3 BASIC14.08□□□□□ -0.16
MMP28Q9H239 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.08□□□□□ -0.16
MMP28Q9H239 AF238378.1-201ENST00000526806 358 ntBASIC14.08□□□□□ -0.16
MMP28Q9H239 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC14.08□□□□□ -0.16
MMP28Q9H239 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
MMP28Q9H239 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.08□□□□□ -0.16
MMP28Q9H239 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.08□□□□□ -0.16
MMP28Q9H239 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.08□□□□□ -0.16
MMP28Q9H239 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
MMP28Q9H239 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
MMP28Q9H239 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.08□□□□□ -0.16
MMP28Q9H239 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.08□□□□□ -0.16
MMP28Q9H239 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
MMP28Q9H239 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
MMP28Q9H239 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.16
MMP28Q9H239 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.07□□□□□ -0.16
MMP28Q9H239 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
MMP28Q9H239 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 NCF1C-201ENST00000438382 1427 ntBASIC14.07□□□□□ -0.16
MMP28Q9H239 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 AJ011931.1-201ENST00000618749 2492 ntBASIC14.07□□□□□ -0.16
MMP28Q9H239 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 AC112693.3-201ENST00000624819 1983 ntBASIC14.07□□□□□ -0.16
MMP28Q9H239 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 AC009090.5-201ENST00000624886 2285 ntBASIC14.07□□□□□ -0.16
MMP28Q9H239 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.07□□□□□ -0.16
MMP28Q9H239 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
MMP28Q9H239 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.07□□□□□ -0.16
MMP28Q9H239 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
MMP28Q9H239 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC14.07□□□□□ -0.16
MMP28Q9H239 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.07□□□□□ -0.16
MMP28Q9H239 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.07□□□□□ -0.16
MMP28Q9H239 SART3-203ENST00000546611 1184 ntBASIC14.07□□□□□ -0.16
MMP28Q9H239 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.07□□□□□ -0.16
MMP28Q9H239 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.07□□□□□ -0.16
MMP28Q9H239 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC14.07□□□□□ -0.16
MMP28Q9H239 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC14.07□□□□□ -0.16
MMP28Q9H239 AC120114.3-201ENST00000611923 658 ntBASIC14.07□□□□□ -0.16
MMP28Q9H239 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.07□□□□□ -0.16
MMP28Q9H239 VPS51-217ENST00000639871 243 ntTSL 5 BASIC14.07□□□□□ -0.16
MMP28Q9H239 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC14.07□□□□□ -0.16
MMP28Q9H239 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.07□□□□□ -0.16
MMP28Q9H239 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 HLA-A-201ENST00000376802 1334 ntBASIC14.07□□□□□ -0.16
MMP28Q9H239 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms