Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 KRT43P-201ENST00000434019 910 ntBASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 AC106760.1-201ENST00000508690 800 ntBASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 AL022328.1-201ENST00000610050 478 ntBASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 AC133552.6-201ENST00000613406 534 ntBASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 AL033527.4-201ENST00000641026 673 ntBASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PAAF1Q9BRP4 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 AC005229.1-201ENST00000392885 409 ntBASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 AC092933.1-201ENST00000393644 945 ntBASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 BAATP1-201ENST00000412284 1225 ntBASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PAAF1Q9BRP4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PAAF1Q9BRP4 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms