Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRCH3Q96II8 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LRCH3Q96II8 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRCH3Q96II8 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.04■□□□□ 0.32
LRCH3Q96II8 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.04■□□□□ 0.32
LRCH3Q96II8 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LRCH3Q96II8 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.04■□□□□ 0.32
LRCH3Q96II8 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRCH3Q96II8 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 PARVG-202ENST00000415224 999 ntTSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 AC074338.1-201ENST00000416825 156 ntBASIC17.03■□□□□ 0.32
LRCH3Q96II8 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 FGFR3P1-201ENST00000449999 601 ntBASIC17.03■□□□□ 0.32
LRCH3Q96II8 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 AC007663.3-201ENST00000609632 465 ntBASIC17.03■□□□□ 0.32
LRCH3Q96II8 AF254983.2-201ENST00000612331 135 ntBASIC17.03■□□□□ 0.32
LRCH3Q96II8 AP001527.2-201ENST00000614441 631 ntBASIC17.03■□□□□ 0.32
LRCH3Q96II8 AP001065.2-201ENST00000617205 644 ntBASIC17.03■□□□□ 0.32
LRCH3Q96II8 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRCH3Q96II8 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.03■□□□□ 0.32
LRCH3Q96II8 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRCH3Q96II8 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRCH3Q96II8 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LRCH3Q96II8 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LRCH3Q96II8 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRCH3Q96II8 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRCH3Q96II8 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LRCH3Q96II8 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRCH3Q96II8 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 SLC25A1P3-201ENST00000395415 828 ntBASIC17.02■□□□□ 0.32
LRCH3Q96II8 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 AC234782.1-201ENST00000451950 919 ntBASIC17.02■□□□□ 0.32
LRCH3Q96II8 RN7SL181P-201ENST00000462921 277 ntBASIC17.02■□□□□ 0.32
LRCH3Q96II8 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LRCH3Q96II8 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
LRCH3Q96II8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
LRCH3Q96II8 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.02■□□□□ 0.31
LRCH3Q96II8 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.02■□□□□ 0.31
LRCH3Q96II8 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LRCH3Q96II8 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LRCH3Q96II8 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LRCH3Q96II8 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
LRCH3Q96II8 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LRCH3Q96II8 AGGF1P2-201ENST00000426656 2106 ntBASIC17.02■□□□□ 0.31
LRCH3Q96II8 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LRCH3Q96II8 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LRCH3Q96II8 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LRCH3Q96II8 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
LRCH3Q96II8 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRCH3Q96II8 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LRCH3Q96II8 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRCH3Q96II8 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRCH3Q96II8 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.01■□□□□ 0.31
LRCH3Q96II8 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRCH3Q96II8 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRCH3Q96II8 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LRCH3Q96II8 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRCH3Q96II8 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRCH3Q96II8 ACKR1-201ENST00000368121 1240 ntBASIC17.01■□□□□ 0.31
LRCH3Q96II8 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
LRCH3Q96II8 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.01■□□□□ 0.31
LRCH3Q96II8 ACTG1P2-201ENST00000415776 1125 ntBASIC17.01■□□□□ 0.31
LRCH3Q96II8 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC17.01■□□□□ 0.31
LRCH3Q96II8 ACTG1P11-201ENST00000425411 1125 ntBASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms