Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 RPS8P6-201ENST00000426177 609 ntBASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 AC009078.2-202ENST00000463353 338 ntBASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 KRT8P23-201ENST00000560090 1207 ntBASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC54Q8NEL0 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AC134407.2-201ENST00000625089 1978 ntBASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 TFAMP1-201ENST00000412727 736 ntBASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AL671277.1-201ENST00000429656 993 ntBASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AC007967.2-201ENST00000432613 625 ntBASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AC027307.2-201ENST00000591252 911 ntBASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AC067750.1-201ENST00000608826 6545 ntBASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 AC104581.4-201ENST00000623126 3052 ntBASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 IL9RP2-201ENST00000423948 1312 ntBASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC54Q8NEL0 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC54Q8NEL0 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms