Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 AC074338.1-201ENST00000416825 156 ntBASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 UGT1A2P-201ENST00000454886 866 ntBASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 AC008738.7-201ENST00000609744 511 ntBASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SCUBE3Q8IX30 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
SCUBE3Q8IX30 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.64■□□□□ 0.26
SCUBE3Q8IX30 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AC105917.1-201ENST00000506637 2539 ntBASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AC012645.4-201ENST00000610691 1061 ntBASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SCUBE3Q8IX30 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 LINC01115-203ENST00000606068 577 ntBASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 AC004461.2-201ENST00000629517 803 ntBASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 AC004840.1-201ENST00000636359 365 ntBASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 PAX6-247ENST00000638965 979 ntTSL 5 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SCUBE3Q8IX30 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms