Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 AC009090.5-201ENST00000624886 2285 ntBASIC17.08■□□□□ 0.32
KRT39Q6A163 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
KRT39Q6A163 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.08■□□□□ 0.32
KRT39Q6A163 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.07■□□□□ 0.32
KRT39Q6A163 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
KRT39Q6A163 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.07■□□□□ 0.32
KRT39Q6A163 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
KRT39Q6A163 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.07■□□□□ 0.32
KRT39Q6A163 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.07■□□□□ 0.32
KRT39Q6A163 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.07■□□□□ 0.32
KRT39Q6A163 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.07■□□□□ 0.32
KRT39Q6A163 AC074338.1-201ENST00000416825 156 ntBASIC17.07■□□□□ 0.32
KRT39Q6A163 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.07■□□□□ 0.32
KRT39Q6A163 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.07■□□□□ 0.32
KRT39Q6A163 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.07■□□□□ 0.32
KRT39Q6A163 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.07■□□□□ 0.32
KRT39Q6A163 IGHV3-42-201ENST00000520410 361 ntBASIC17.07■□□□□ 0.32
KRT39Q6A163 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.07■□□□□ 0.32
KRT39Q6A163 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.07■□□□□ 0.32
KRT39Q6A163 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.07■□□□□ 0.32
KRT39Q6A163 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
KRT39Q6A163 AC093512.1-201ENST00000617969 520 ntBASIC17.07■□□□□ 0.32
KRT39Q6A163 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.07■□□□□ 0.32
KRT39Q6A163 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
KRT39Q6A163 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
KRT39Q6A163 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 PKD1P5-201ENST00000532415 10291 ntBASIC17.07■□□□□ 0.32
KRT39Q6A163 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.07■□□□□ 0.32
KRT39Q6A163 TMBIM7P-203ENST00000641617 1718 ntBASIC17.07■□□□□ 0.32
KRT39Q6A163 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.07■□□□□ 0.32
KRT39Q6A163 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.07■□□□□ 0.32
KRT39Q6A163 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
KRT39Q6A163 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
KRT39Q6A163 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
KRT39Q6A163 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.06■□□□□ 0.32
KRT39Q6A163 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.06■□□□□ 0.32
KRT39Q6A163 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.06■□□□□ 0.32
KRT39Q6A163 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.06■□□□□ 0.32
KRT39Q6A163 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.06■□□□□ 0.32
KRT39Q6A163 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
KRT39Q6A163 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.06■□□□□ 0.32
KRT39Q6A163 PMS2P2-201ENST00000425039 1128 ntBASIC17.06■□□□□ 0.32
KRT39Q6A163 AC055876.3-201ENST00000431496 288 ntBASIC17.06■□□□□ 0.32
KRT39Q6A163 AC241585.1-201ENST00000433527 519 ntBASIC17.06■□□□□ 0.32
KRT39Q6A163 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.06■□□□□ 0.32
KRT39Q6A163 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.06■□□□□ 0.32
KRT39Q6A163 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.06■□□□□ 0.32
KRT39Q6A163 AL844908.2-201ENST00000609461 460 ntBASIC17.06■□□□□ 0.32
KRT39Q6A163 AC138649.4-201ENST00000612222 287 ntBASIC17.06■□□□□ 0.32
KRT39Q6A163 AC106028.4-201ENST00000614509 607 ntBASIC17.06■□□□□ 0.32
KRT39Q6A163 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 AC022532.1-201ENST00000624563 1728 ntBASIC17.06■□□□□ 0.32
KRT39Q6A163 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
KRT39Q6A163 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.06■□□□□ 0.32
KRT39Q6A163 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
KRT39Q6A163 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.06■□□□□ 0.32
KRT39Q6A163 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.06■□□□□ 0.32
KRT39Q6A163 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 AC092384.3-202ENST00000564646 2873 ntBASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms