Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
H3F3AP84243 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
H3F3AP84243 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.17□□□□□ -0.14
H3F3AP84243 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
H3F3AP84243 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 AC074338.1-201ENST00000416825 156 ntBASIC14.16□□□□□ -0.14
H3F3AP84243 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.16□□□□□ -0.14
H3F3AP84243 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
H3F3AP84243 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.16□□□□□ -0.14
H3F3AP84243 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.16□□□□□ -0.14
H3F3AP84243 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.16□□□□□ -0.14
H3F3AP84243 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.16□□□□□ -0.14
H3F3AP84243 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.16□□□□□ -0.14
H3F3AP84243 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
H3F3AP84243 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
H3F3AP84243 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.16□□□□□ -0.14
H3F3AP84243 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
H3F3AP84243 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
H3F3AP84243 PRAL-201ENST00000624952 3286 ntBASIC14.16□□□□□ -0.14
H3F3AP84243 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.15□□□□□ -0.14
H3F3AP84243 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.15□□□□□ -0.14
H3F3AP84243 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
H3F3AP84243 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
H3F3AP84243 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
H3F3AP84243 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.15□□□□□ -0.14
H3F3AP84243 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.15□□□□□ -0.14
H3F3AP84243 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
H3F3AP84243 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.15□□□□□ -0.14
H3F3AP84243 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 RNA5SP421-201ENST00000516864 134 ntBASIC14.15□□□□□ -0.14
H3F3AP84243 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.15□□□□□ -0.14
H3F3AP84243 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.15□□□□□ -0.14
H3F3AP84243 AC074044.1-201ENST00000609673 707 ntBASIC14.15□□□□□ -0.14
H3F3AP84243 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 AC008741.2-201ENST00000612792 3115 ntBASIC14.15□□□□□ -0.14
H3F3AP84243 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
H3F3AP84243 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
H3F3AP84243 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.15□□□□□ -0.14
H3F3AP84243 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.15□□□□□ -0.14
H3F3AP84243 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.15□□□□□ -0.14
H3F3AP84243 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.15□□□□□ -0.14
H3F3AP84243 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
H3F3AP84243 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
H3F3AP84243 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms