Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.6■□□□□ 0.09
PKNOX1P55347 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PKNOX1P55347 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PKNOX1P55347 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.6■□□□□ 0.09
PKNOX1P55347 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PKNOX1P55347 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PKNOX1P55347 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PKNOX1P55347 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
PKNOX1P55347 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 TCAF2P1-201ENST00000291129 2421 ntBASIC15.59■□□□□ 0.09
PKNOX1P55347 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.59■□□□□ 0.09
PKNOX1P55347 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.59■□□□□ 0.09
PKNOX1P55347 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
PKNOX1P55347 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.59■□□□□ 0.09
PKNOX1P55347 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.59■□□□□ 0.09
PKNOX1P55347 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.59■□□□□ 0.09
PKNOX1P55347 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.59■□□□□ 0.09
PKNOX1P55347 AC091951.1-201ENST00000512854 2465 ntBASIC15.59■□□□□ 0.09
PKNOX1P55347 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
PKNOX1P55347 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.59■□□□□ 0.09
PKNOX1P55347 AL691432.1-201ENST00000596308 1422 ntBASIC15.59■□□□□ 0.09
PKNOX1P55347 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
PKNOX1P55347 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PKNOX1P55347 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PKNOX1P55347 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
PKNOX1P55347 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.58■□□□□ 0.09
PKNOX1P55347 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
PKNOX1P55347 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PKNOX1P55347 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
PKNOX1P55347 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.09
PKNOX1P55347 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.58■□□□□ 0.09
PKNOX1P55347 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
PKNOX1P55347 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
PKNOX1P55347 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.58■□□□□ 0.08
PKNOX1P55347 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.58■□□□□ 0.08
PKNOX1P55347 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.58■□□□□ 0.08
PKNOX1P55347 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.58■□□□□ 0.08
PKNOX1P55347 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.58■□□□□ 0.08
PKNOX1P55347 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.58■□□□□ 0.08
PKNOX1P55347 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.58■□□□□ 0.08
PKNOX1P55347 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.58■□□□□ 0.08
PKNOX1P55347 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.58■□□□□ 0.08
PKNOX1P55347 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.58■□□□□ 0.08
PKNOX1P55347 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
PKNOX1P55347 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.58■□□□□ 0.08
PKNOX1P55347 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PKNOX1P55347 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms