Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL18A1P39060 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC20.36■□□□□ 0.85
COL18A1P39060 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC20.36■□□□□ 0.85
COL18A1P39060 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC20.36■□□□□ 0.85
COL18A1P39060 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC20.36■□□□□ 0.85
COL18A1P39060 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
COL18A1P39060 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC20.35■□□□□ 0.85
COL18A1P39060 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC20.35■□□□□ 0.85
COL18A1P39060 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC20.35■□□□□ 0.85
COL18A1P39060 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC20.35■□□□□ 0.85
COL18A1P39060 IGF1-203ENST00000392904 761 ntTSL 5 BASIC20.35■□□□□ 0.85
COL18A1P39060 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
COL18A1P39060 MSRA-203ENST00000441698 788 ntTSL 2 BASIC20.35■□□□□ 0.85
COL18A1P39060 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC20.35■□□□□ 0.85
COL18A1P39060 CU633904.3-201ENST00000624042 1029 ntBASIC20.35■□□□□ 0.85
COL18A1P39060 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC20.35■□□□□ 0.85
COL18A1P39060 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL18A1P39060 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC20.35■□□□□ 0.85
COL18A1P39060 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL18A1P39060 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
COL18A1P39060 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
COL18A1P39060 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
COL18A1P39060 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.34■□□□□ 0.85
COL18A1P39060 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL18A1P39060 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL18A1P39060 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC20.34■□□□□ 0.85
COL18A1P39060 PRKXP1-201ENST00000561423 1122 ntBASIC20.34■□□□□ 0.85
COL18A1P39060 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.34■□□□□ 0.85
COL18A1P39060 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL18A1P39060 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.34■□□□□ 0.85
COL18A1P39060 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL18A1P39060 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL18A1P39060 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
COL18A1P39060 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL18A1P39060 SLC16A6P1-201ENST00000413214 1059 ntBASIC20.34■□□□□ 0.85
COL18A1P39060 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL18A1P39060 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL18A1P39060 AL596276.2-201ENST00000447525 331 ntBASIC20.34■□□□□ 0.85
COL18A1P39060 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC20.34■□□□□ 0.85
COL18A1P39060 SUPT4H1P2-201ENST00000501248 353 ntBASIC20.34■□□□□ 0.85
COL18A1P39060 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC20.34■□□□□ 0.85
COL18A1P39060 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC20.34■□□□□ 0.85
COL18A1P39060 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC20.34■□□□□ 0.85
COL18A1P39060 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
COL18A1P39060 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL18A1P39060 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC20.33■□□□□ 0.85
COL18A1P39060 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL18A1P39060 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL18A1P39060 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC20.33■□□□□ 0.85
COL18A1P39060 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
COL18A1P39060 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
COL18A1P39060 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.33■□□□□ 0.84
COL18A1P39060 AP000593.2-201ENST00000542775 1433 ntBASIC20.33■□□□□ 0.84
COL18A1P39060 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
COL18A1P39060 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC20.33■□□□□ 0.84
COL18A1P39060 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC20.33■□□□□ 0.84
COL18A1P39060 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC20.33■□□□□ 0.84
COL18A1P39060 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC20.33■□□□□ 0.84
COL18A1P39060 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC20.33■□□□□ 0.84
COL18A1P39060 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
COL18A1P39060 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
COL18A1P39060 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC20.33■□□□□ 0.84
COL18A1P39060 AL023803.2-201ENST00000620080 638 ntBASIC20.33■□□□□ 0.84
COL18A1P39060 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL18A1P39060 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.32■□□□□ 0.84
COL18A1P39060 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
COL18A1P39060 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC20.32■□□□□ 0.84
COL18A1P39060 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.32■□□□□ 0.84
COL18A1P39060 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
COL18A1P39060 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC20.32■□□□□ 0.84
COL18A1P39060 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC20.32■□□□□ 0.84
COL18A1P39060 RPL17P11-201ENST00000417593 544 ntBASIC20.32■□□□□ 0.84
COL18A1P39060 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL18A1P39060 LINC02447-202ENST00000501888 2146 ntBASIC20.32■□□□□ 0.84
COL18A1P39060 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms