Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
BRCA1P38398 PKD1P6-201ENST00000343738 4769 ntBASIC18.72■□□□□ 0.59
BRCA1P38398 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
BRCA1P38398 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.72■□□□□ 0.59
BRCA1P38398 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BRCA1P38398 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.72■□□□□ 0.59
BRCA1P38398 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
BRCA1P38398 SHC1P1-201ENST00000425230 1745 ntBASIC18.72■□□□□ 0.59
BRCA1P38398 AC106886.4-201ENST00000623557 2502 ntBASIC18.72■□□□□ 0.59
BRCA1P38398 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
BRCA1P38398 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BRCA1P38398 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
BRCA1P38398 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BRCA1P38398 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.71■□□□□ 0.59
BRCA1P38398 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 AP002803.1-201ENST00000528836 498 ntBASIC18.71■□□□□ 0.59
BRCA1P38398 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.71■□□□□ 0.59
BRCA1P38398 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
BRCA1P38398 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
BRCA1P38398 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.71■□□□□ 0.59
BRCA1P38398 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.71■□□□□ 0.59
BRCA1P38398 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.71■□□□□ 0.59
BRCA1P38398 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
BRCA1P38398 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 AC104073.2-201ENST00000453737 312 ntBASIC18.71■□□□□ 0.59
BRCA1P38398 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC18.71■□□□□ 0.59
BRCA1P38398 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC18.71■□□□□ 0.59
BRCA1P38398 AC005618.3-201ENST00000624928 458 ntBASIC18.71■□□□□ 0.59
BRCA1P38398 AC127024.7-201ENST00000625101 200 ntBASIC18.71■□□□□ 0.59
BRCA1P38398 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BRCA1P38398 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.7■□□□□ 0.58
BRCA1P38398 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.7■□□□□ 0.58
BRCA1P38398 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC18.7■□□□□ 0.58
BRCA1P38398 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
BRCA1P38398 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 RPL18AP3-201ENST00000462885 528 ntBASIC18.7■□□□□ 0.58
BRCA1P38398 AC026410.1-201ENST00000507366 1101 ntBASIC18.7■□□□□ 0.58
BRCA1P38398 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC18.7■□□□□ 0.58
BRCA1P38398 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 AC026803.1-201ENST00000569130 274 ntBASIC18.7■□□□□ 0.58
BRCA1P38398 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.7■□□□□ 0.58
BRCA1P38398 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.7■□□□□ 0.58
BRCA1P38398 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.7■□□□□ 0.58
BRCA1P38398 AC006449.6-201ENST00000612330 2296 ntBASIC18.7■□□□□ 0.58
BRCA1P38398 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.7■□□□□ 0.58
BRCA1P38398 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRCA1P38398 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.7■□□□□ 0.58
BRCA1P38398 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRCA1P38398 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.69■□□□□ 0.58
BRCA1P38398 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRCA1P38398 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.69■□□□□ 0.58
BRCA1P38398 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
BRCA1P38398 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.69■□□□□ 0.58
BRCA1P38398 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
BRCA1P38398 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.69■□□□□ 0.58
BRCA1P38398 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.69■□□□□ 0.58
BRCA1P38398 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRCA1P38398 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC18.69■□□□□ 0.58
BRCA1P38398 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC18.69■□□□□ 0.58
BRCA1P38398 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC18.69■□□□□ 0.58
BRCA1P38398 AC002472.3-201ENST00000640124 621 ntBASIC18.69■□□□□ 0.58
BRCA1P38398 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.69■□□□□ 0.58
BRCA1P38398 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRCA1P38398 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRCA1P38398 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.69■□□□□ 0.58
BRCA1P38398 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.69■□□□□ 0.58
BRCA1P38398 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRCA1P38398 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.69■□□□□ 0.58
BRCA1P38398 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRCA1P38398 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC18.69■□□□□ 0.58
BRCA1P38398 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18.69■□□□□ 0.58
BRCA1P38398 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.69■□□□□ 0.58
BRCA1P38398 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC18.69■□□□□ 0.58
BRCA1P38398 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms