Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
COL4A5P29400 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
COL4A5P29400 AL596276.2-201ENST00000447525 331 ntBASIC18.55■□□□□ 0.56
COL4A5P29400 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A5P29400 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A5P29400 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A5P29400 MARK2P5-201ENST00000507649 634 ntBASIC18.55■□□□□ 0.56
COL4A5P29400 AC005740.2-201ENST00000511085 419 ntBASIC18.55■□□□□ 0.56
COL4A5P29400 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
COL4A5P29400 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A5P29400 AL161670.2-201ENST00000557650 1227 ntBASIC18.55■□□□□ 0.56
COL4A5P29400 MIR4683-201ENST00000579659 81 ntBASIC18.55■□□□□ 0.56
COL4A5P29400 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A5P29400 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A5P29400 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.55■□□□□ 0.56
COL4A5P29400 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 AC124067.4-201ENST00000519691 2379 ntBASIC18.55■□□□□ 0.56
COL4A5P29400 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
COL4A5P29400 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A5P29400 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A5P29400 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A5P29400 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A5P29400 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A5P29400 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A5P29400 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A5P29400 AL160314.3-201ENST00000556041 767 ntBASIC18.54■□□□□ 0.56
COL4A5P29400 EID1-202ENST00000560490 584 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A5P29400 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A5P29400 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.54■□□□□ 0.56
COL4A5P29400 YRDCP1-201ENST00000621419 643 ntBASIC18.54■□□□□ 0.56
COL4A5P29400 AC068587.8-201ENST00000641239 219 ntBASIC18.54■□□□□ 0.56
COL4A5P29400 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL4A5P29400 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A5P29400 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A5P29400 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A5P29400 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL4A5P29400 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL4A5P29400 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
COL4A5P29400 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 KRT8P29-201ENST00000420409 1371 ntBASIC18.54■□□□□ 0.56
COL4A5P29400 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 HLA-K-203ENST00000430151 1046 ntBASIC18.54■□□□□ 0.56
COL4A5P29400 RN7SL181P-201ENST00000462921 277 ntBASIC18.54■□□□□ 0.56
COL4A5P29400 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A5P29400 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A5P29400 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 AC138466.3-201ENST00000619983 221 ntBASIC18.54■□□□□ 0.56
COL4A5P29400 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A5P29400 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL4A5P29400 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
COL4A5P29400 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL4A5P29400 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A5P29400 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A5P29400 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC18.53■□□□□ 0.56
COL4A5P29400 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.53■□□□□ 0.56
COL4A5P29400 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC18.53■□□□□ 0.56
COL4A5P29400 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 AC004899.1-201ENST00000424687 1714 ntBASIC18.53■□□□□ 0.56
COL4A5P29400 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A5P29400 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A5P29400 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A5P29400 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A5P29400 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms