Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
SEMA3DO95025 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
SEMA3DO95025 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.23■□□□□ 0.03
SEMA3DO95025 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
SEMA3DO95025 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
SEMA3DO95025 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.22■□□□□ 0.03
SEMA3DO95025 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 C8orf49-201ENST00000525043 1968 ntBASIC15.22■□□□□ 0.03
SEMA3DO95025 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SEMA3DO95025 PRAL-201ENST00000624952 3286 ntBASIC15.22■□□□□ 0.03
SEMA3DO95025 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.22■□□□□ 0.03
SEMA3DO95025 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.22■□□□□ 0.03
SEMA3DO95025 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SEMA3DO95025 SPDYE17-201ENST00000412399 783 ntBASIC15.22■□□□□ 0.03
SEMA3DO95025 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.22■□□□□ 0.03
SEMA3DO95025 PHKG1P2-201ENST00000457537 863 ntBASIC15.22■□□□□ 0.03
SEMA3DO95025 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.22■□□□□ 0.03
SEMA3DO95025 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
SEMA3DO95025 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 AC134684.3-201ENST00000641758 218 ntBASIC15.22■□□□□ 0.03
SEMA3DO95025 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SEMA3DO95025 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SEMA3DO95025 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SEMA3DO95025 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SEMA3DO95025 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SEMA3DO95025 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.22■□□□□ 0.03
SEMA3DO95025 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SEMA3DO95025 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.21■□□□□ 0.03
SEMA3DO95025 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.21■□□□□ 0.03
SEMA3DO95025 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.21■□□□□ 0.03
SEMA3DO95025 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.21■□□□□ 0.03
SEMA3DO95025 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
SEMA3DO95025 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.21■□□□□ 0.03
SEMA3DO95025 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.21■□□□□ 0.03
SEMA3DO95025 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.21■□□□□ 0.03
SEMA3DO95025 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.21■□□□□ 0.03
SEMA3DO95025 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.21■□□□□ 0.03
SEMA3DO95025 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 AC003101.2-201ENST00000612557 442 ntBASIC15.21■□□□□ 0.03
SEMA3DO95025 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.21■□□□□ 0.03
SEMA3DO95025 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.21■□□□□ 0.03
SEMA3DO95025 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SEMA3DO95025 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.21■□□□□ 0.03
SEMA3DO95025 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SEMA3DO95025 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.21■□□□□ 0.02
SEMA3DO95025 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.21■□□□□ 0.02
SEMA3DO95025 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.21■□□□□ 0.02
SEMA3DO95025 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
SEMA3DO95025 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms