Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.91□□□□□ -0.02
LDB3O75112 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.91□□□□□ -0.02
LDB3O75112 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDB3O75112 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.91□□□□□ -0.02
LDB3O75112 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.91□□□□□ -0.02
LDB3O75112 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.91□□□□□ -0.02
LDB3O75112 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.9□□□□□ -0.02
LDB3O75112 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.9□□□□□ -0.02
LDB3O75112 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.9□□□□□ -0.02
LDB3O75112 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.9□□□□□ -0.02
LDB3O75112 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.9□□□□□ -0.02
LDB3O75112 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.9□□□□□ -0.02
LDB3O75112 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LDB3O75112 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
LDB3O75112 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.9□□□□□ -0.02
LDB3O75112 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.9□□□□□ -0.02
LDB3O75112 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
LDB3O75112 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDB3O75112 AC022144.1-201ENST00000602255 1580 ntBASIC14.9□□□□□ -0.02
LDB3O75112 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LDB3O75112 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.89□□□□□ -0.03
LDB3O75112 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
LDB3O75112 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.89□□□□□ -0.03
LDB3O75112 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.89□□□□□ -0.03
LDB3O75112 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.89□□□□□ -0.03
LDB3O75112 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 AC136604.1-201ENST00000418535 575 ntBASIC14.89□□□□□ -0.03
LDB3O75112 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.89□□□□□ -0.03
LDB3O75112 AC009477.1-201ENST00000452936 217 ntBASIC14.89□□□□□ -0.03
LDB3O75112 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.89□□□□□ -0.03
LDB3O75112 INGX-202ENST00000489074 768 ntBASIC14.89□□□□□ -0.03
LDB3O75112 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.89□□□□□ -0.03
LDB3O75112 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.89□□□□□ -0.03
LDB3O75112 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.89□□□□□ -0.03
LDB3O75112 AC009407.1-201ENST00000568958 598 ntBASIC14.89□□□□□ -0.03
LDB3O75112 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.89□□□□□ -0.03
LDB3O75112 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.89□□□□□ -0.03
LDB3O75112 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LDB3O75112 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.89□□□□□ -0.03
LDB3O75112 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.89□□□□□ -0.03
LDB3O75112 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDB3O75112 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LDB3O75112 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDB3O75112 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDB3O75112 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.88□□□□□ -0.03
LDB3O75112 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.88□□□□□ -0.03
LDB3O75112 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LDB3O75112 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDB3O75112 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LDB3O75112 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
LDB3O75112 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms