Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.8■□□□□ 0.44
CHMP2AO43633 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
CHMP2AO43633 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.8■□□□□ 0.44
CHMP2AO43633 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CHMP2AO43633 AC136604.1-201ENST00000418535 575 ntBASIC17.8■□□□□ 0.44
CHMP2AO43633 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.8■□□□□ 0.44
CHMP2AO43633 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CHMP2AO43633 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP2AO43633 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.8■□□□□ 0.44
CHMP2AO43633 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP2AO43633 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP2AO43633 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.8■□□□□ 0.44
CHMP2AO43633 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CHMP2AO43633 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 TNRC18P3-201ENST00000441896 2691 ntBASIC17.8■□□□□ 0.44
CHMP2AO43633 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP2AO43633 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.8■□□□□ 0.44
CHMP2AO43633 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CHMP2AO43633 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.8■□□□□ 0.44
CHMP2AO43633 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP2AO43633 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CHMP2AO43633 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CHMP2AO43633 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.79■□□□□ 0.44
CHMP2AO43633 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CHMP2AO43633 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CHMP2AO43633 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CHMP2AO43633 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP2AO43633 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 RPL13P2-201ENST00000440687 659 ntBASIC17.79■□□□□ 0.44
CHMP2AO43633 CRB3P1-201ENST00000449338 276 ntBASIC17.79■□□□□ 0.44
CHMP2AO43633 COX20P2-201ENST00000452636 358 ntBASIC17.79■□□□□ 0.44
CHMP2AO43633 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP2AO43633 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP2AO43633 AC092337.1-201ENST00000568699 1129 ntBASIC17.79■□□□□ 0.44
CHMP2AO43633 MIR4313-201ENST00000580760 101 ntBASIC17.79■□□□□ 0.44
CHMP2AO43633 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.79■□□□□ 0.44
CHMP2AO43633 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.79■□□□□ 0.44
CHMP2AO43633 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
CHMP2AO43633 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
CHMP2AO43633 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CHMP2AO43633 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.79■□□□□ 0.44
CHMP2AO43633 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.79■□□□□ 0.44
CHMP2AO43633 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP2AO43633 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.79■□□□□ 0.44
CHMP2AO43633 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP2AO43633 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CHMP2AO43633 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CHMP2AO43633 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP2AO43633 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CHMP2AO43633 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP2AO43633 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP2AO43633 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CHMP2AO43633 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.78■□□□□ 0.44
CHMP2AO43633 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CHMP2AO43633 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP2AO43633 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CHMP2AO43633 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CHMP2AO43633 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP2AO43633 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms