Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
FOXN3O00409 AL589739.1-201ENST00000607720 493 ntBASIC16.95■□□□□ 0.3
FOXN3O00409 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXN3O00409 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXN3O00409 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXN3O00409 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
FOXN3O00409 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXN3O00409 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXN3O00409 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
FOXN3O00409 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXN3O00409 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.95■□□□□ 0.3
FOXN3O00409 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXN3O00409 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXN3O00409 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.95■□□□□ 0.3
FOXN3O00409 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXN3O00409 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXN3O00409 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
FOXN3O00409 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXN3O00409 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.94■□□□□ 0.3
FOXN3O00409 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
FOXN3O00409 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 MIR1233-2-201ENST00000408138 82 ntBASIC16.94■□□□□ 0.3
FOXN3O00409 MIR1233-1-201ENST00000408722 82 ntBASIC16.94■□□□□ 0.3
FOXN3O00409 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.94■□□□□ 0.3
FOXN3O00409 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.94■□□□□ 0.3
FOXN3O00409 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXN3O00409 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXN3O00409 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
FOXN3O00409 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
FOXN3O00409 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
FOXN3O00409 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXN3O00409 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXN3O00409 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXN3O00409 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
FOXN3O00409 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.93■□□□□ 0.3
FOXN3O00409 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
FOXN3O00409 RPL37AP1-201ENST00000412502 279 ntBASIC16.93■□□□□ 0.3
FOXN3O00409 TARDBPP1-201ENST00000442013 1203 ntBASIC16.93■□□□□ 0.3
FOXN3O00409 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.93■□□□□ 0.3
FOXN3O00409 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.93■□□□□ 0.3
FOXN3O00409 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXN3O00409 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXN3O00409 AL691403.2-201ENST00000618460 490 ntBASIC16.93■□□□□ 0.3
FOXN3O00409 AC023511.2-201ENST00000618803 211 ntBASIC16.93■□□□□ 0.3
FOXN3O00409 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXN3O00409 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.93■□□□□ 0.3
FOXN3O00409 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 AC011270.2-201ENST00000624293 2550 ntBASIC16.93■□□□□ 0.3
FOXN3O00409 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXN3O00409 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
FOXN3O00409 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXN3O00409 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXN3O00409 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.93■□□□□ 0.3
FOXN3O00409 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXN3O00409 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXN3O00409 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXN3O00409 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXN3O00409 FER1L4-210ENST00000615531 5998 ntBASIC16.92■□□□□ 0.3
FOXN3O00409 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms