Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 TEX30-203ENST00000376022 828 ntTSL 2 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 USP40-206ENST00000443711 628 ntTSL 2 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC29.78■■■□□ 2.36
SHROOM4Q9ULL8 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC29.77■■■□□ 2.36
SHROOM4Q9ULL8 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC29.76■■■□□ 2.36
SHROOM4Q9ULL8 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC29.76■■■□□ 2.36
SHROOM4Q9ULL8 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC29.76■■■□□ 2.36
SHROOM4Q9ULL8 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC29.76■■■□□ 2.36
SHROOM4Q9ULL8 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
SHROOM4Q9ULL8 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 C2orf27AP3-201ENST00000434123 579 ntBASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 RN7SL769P-201ENST00000469386 295 ntBASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 TSACC-208ENST00000481479 741 ntTSL 2 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 AL354718.3-201ENST00000616414 581 ntBASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 CR382287.1-201ENST00000623954 586 ntBASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 WT1-209ENST00000530998 2421 ntTSL 2 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
SHROOM4Q9ULL8 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms