Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.82■□□□□ 0.6
CLIP2Q9UDT6 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 AC004987.2-201ENST00000395959 1148 ntBASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 FO393414.2-201ENST00000405153 598 ntBASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 AC114501.2-201ENST00000439631 535 ntBASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 AC245100.5-201ENST00000452108 331 ntBASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 AP005018.1-201ENST00000525475 301 ntBASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 SPDYE22P-201ENST00000582158 798 ntBASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 AC004790.1-201ENST00000612686 536 ntBASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 AC004461.2-201ENST00000629517 803 ntBASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLIP2Q9UDT6 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 AC243562.2-201ENST00000561247 970 ntBASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP2Q9UDT6 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLIP2Q9UDT6 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms