Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC092658.1-201ENST00000505836 891 ntBASIC16.22■□□□□ 0.19
TDP1Q9NUW8 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 AC093813.1-201ENST00000605066 256 ntBASIC16.22■□□□□ 0.19
TDP1Q9NUW8 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 AL662844.4-201ENST00000606367 2838 ntBASIC16.22■□□□□ 0.19
TDP1Q9NUW8 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TDP1Q9NUW8 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 MTHFR-217ENST00000641820 1569 ntBASIC16.21■□□□□ 0.19
TDP1Q9NUW8 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 AC092933.1-201ENST00000393644 945 ntBASIC16.21■□□□□ 0.19
TDP1Q9NUW8 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 AC007551.1-201ENST00000457394 519 ntBASIC16.21■□□□□ 0.19
TDP1Q9NUW8 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 AC084018.2-201ENST00000613093 2607 ntBASIC16.21■□□□□ 0.19
TDP1Q9NUW8 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TDP1Q9NUW8 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
TDP1Q9NUW8 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
TDP1Q9NUW8 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TDP1Q9NUW8 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 REXO1L6P-201ENST00000603433 1515 ntBASIC16.2■□□□□ 0.18
TDP1Q9NUW8 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 MSTO2P-201ENST00000314835 1709 ntBASIC16.2■□□□□ 0.18
TDP1Q9NUW8 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 ACKR1-201ENST00000368121 1240 ntBASIC16.2■□□□□ 0.18
TDP1Q9NUW8 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 RPL7P3-201ENST00000441388 714 ntBASIC16.2■□□□□ 0.18
TDP1Q9NUW8 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 MIR4313-201ENST00000580760 101 ntBASIC16.2■□□□□ 0.18
TDP1Q9NUW8 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.2■□□□□ 0.18
TDP1Q9NUW8 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms