Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CISHQ9NSE2 RNA5SP421-201ENST00000516864 134 ntBASIC16.87■□□□□ 0.29
CISHQ9NSE2 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 AC008738.7-201ENST00000609744 511 ntBASIC16.87■□□□□ 0.29
CISHQ9NSE2 AF228730.6-201ENST00000641497 218 ntBASIC16.87■□□□□ 0.29
CISHQ9NSE2 AC084121.3-201ENST00000641716 218 ntBASIC16.87■□□□□ 0.29
CISHQ9NSE2 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 AC009090.5-201ENST00000624886 2285 ntBASIC16.87■□□□□ 0.29
CISHQ9NSE2 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CISHQ9NSE2 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CISHQ9NSE2 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CISHQ9NSE2 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CISHQ9NSE2 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CISHQ9NSE2 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.87■□□□□ 0.29
CISHQ9NSE2 AC127383.1-201ENST00000444697 1800 ntBASIC16.86■□□□□ 0.29
CISHQ9NSE2 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 BTBD7P1-201ENST00000447253 1453 ntBASIC16.86■□□□□ 0.29
CISHQ9NSE2 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 KRT18P64-201ENST00000434946 1219 ntBASIC16.86■□□□□ 0.29
CISHQ9NSE2 AC114501.2-201ENST00000439631 535 ntBASIC16.86■□□□□ 0.29
CISHQ9NSE2 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 AC004840.1-201ENST00000636359 365 ntBASIC16.86■□□□□ 0.29
CISHQ9NSE2 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 AC020658.6-201ENST00000623564 1870 ntBASIC16.86■□□□□ 0.29
CISHQ9NSE2 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CISHQ9NSE2 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CISHQ9NSE2 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 INGX-202ENST00000489074 768 ntBASIC16.85■□□□□ 0.29
CISHQ9NSE2 SLED1-202ENST00000512051 380 ntBASIC16.85■□□□□ 0.29
CISHQ9NSE2 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 AL355385.1-201ENST00000606123 409 ntBASIC16.85■□□□□ 0.29
CISHQ9NSE2 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.85■□□□□ 0.29
CISHQ9NSE2 AC004461.2-201ENST00000629517 803 ntBASIC16.85■□□□□ 0.29
CISHQ9NSE2 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.85■□□□□ 0.29
CISHQ9NSE2 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CISHQ9NSE2 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms