Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 SSR4P1-203ENST00000599569 2260 ntBASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 AL513480.1-201ENST00000451731 511 ntBASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 BMF-207ENST00000559701 630 ntTSL 3 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 TBCB-205ENST00000585746 875 ntTSL 3 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.75□□□□□ -0.21
CHMP1AQ9HD42 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 RNU1-129P-201ENST00000384064 167 ntBASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 CXCL1P1-201ENST00000502804 216 ntBASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 U1.21-201ENST00000580816 167 ntBASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
CHMP1AQ9HD42 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms