Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
BRF2Q9HAW0 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
BRF2Q9HAW0 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.16■□□□□ 0.02
BRF2Q9HAW0 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 AL607033.1-201ENST00000623900 1599 ntBASIC15.15■□□□□ 0.02
BRF2Q9HAW0 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.15■□□□□ 0.02
BRF2Q9HAW0 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 CNN2P11-201ENST00000429351 262 ntBASIC15.15■□□□□ 0.02
BRF2Q9HAW0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 MIR4453-201ENST00000584019 89 ntBASIC15.15■□□□□ 0.02
BRF2Q9HAW0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.15■□□□□ 0.02
BRF2Q9HAW0 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BRF2Q9HAW0 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AC138035.3-201ENST00000622706 2791 ntBASIC15.14■□□□□ 0.01
BRF2Q9HAW0 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BRF2Q9HAW0 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BRF2Q9HAW0 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms