Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 AP001282.1-201ENST00000531301 1499 ntBASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAIPQ9BWF2 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 BNIP3P1-202ENST00000550043 1585 ntBASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 AC098850.1-201ENST00000419919 790 ntBASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 CTBP2P3-201ENST00000585629 1255 ntBASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAIPQ9BWF2 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AL359881.2-201ENST00000602973 570 ntBASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AL162274.1-201ENST00000617191 1098 ntBASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 AC132872.4-202ENST00000622924 2756 ntBASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAIPQ9BWF2 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms