Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AC100757.3-201ENST00000622361 1406 ntBASIC11.11□□□□□ -0.63
UPK3BQ9BT76 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 RELA-227ENST00000615805 2236 ntTSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 RBM39-205ENST00000397370 612 ntTSL 2 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 HNRNPA1P40-201ENST00000426371 1278 ntBASIC11.11□□□□□ -0.63
UPK3BQ9BT76 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 FAM207CP-201ENST00000443486 507 ntBASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AL139010.1-201ENST00000454878 894 ntBASIC11.11□□□□□ -0.63
UPK3BQ9BT76 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 BANF1P1-201ENST00000553684 263 ntBASIC11.11□□□□□ -0.63
UPK3BQ9BT76 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 PRR29-209ENST00000582540 967 ntTSL 2 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AL589739.1-201ENST00000607720 493 ntBASIC11.11□□□□□ -0.63
UPK3BQ9BT76 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AL138828.2-201ENST00000615812 383 ntBASIC11.11□□□□□ -0.63
UPK3BQ9BT76 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 AC106886.4-201ENST00000623557 2502 ntBASIC11.11□□□□□ -0.63
UPK3BQ9BT76 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
UPK3BQ9BT76 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
UPK3BQ9BT76 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms