Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 PHKG1P2-201ENST00000457537 863 ntBASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 SDHAP3-202ENST00000515467 728 ntBASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 AC011477.6-201ENST00000604980 1927 ntBASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTCHD1Q96NR3 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 ZNF890P-202ENST00000530367 1156 ntBASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AL450472.2-201ENST00000603663 1156 ntBASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AC008738.7-201ENST00000609744 511 ntBASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AL109936.8-201ENST00000641772 604 ntBASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 AL513477.1-201ENST00000602865 2407 ntBASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PTCHD1Q96NR3 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
PTCHD1Q96NR3 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.96□□□□□ -0.02
PTCHD1Q96NR3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PTCHD1Q96NR3 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.96□□□□□ -0.02
PTCHD1Q96NR3 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
PTCHD1Q96NR3 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.96□□□□□ -0.02
PTCHD1Q96NR3 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.96□□□□□ -0.02
PTCHD1Q96NR3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 BTBD7P1-201ENST00000447253 1453 ntBASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.95□□□□□ -0.02
PTCHD1Q96NR3 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms