Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CPNE4Q96A23 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CPNE4Q96A23 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CPNE4Q96A23 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CPNE4Q96A23 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CPNE4Q96A23 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CPNE4Q96A23 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CPNE4Q96A23 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CPNE4Q96A23 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
CPNE4Q96A23 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CPNE4Q96A23 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CPNE4Q96A23 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
CPNE4Q96A23 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.12
CPNE4Q96A23 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CPNE4Q96A23 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.27□□□□□ -0.12
CPNE4Q96A23 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 AC007326.2-201ENST00000624224 7579 ntBASIC14.27□□□□□ -0.12
CPNE4Q96A23 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
CPNE4Q96A23 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CPNE4Q96A23 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 HIST3H2BA-201ENST00000436555 524 ntBASIC14.27□□□□□ -0.13
CPNE4Q96A23 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 PHKG1P2-201ENST00000457537 863 ntBASIC14.27□□□□□ -0.13
CPNE4Q96A23 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CPNE4Q96A23 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.13
CPNE4Q96A23 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 AZGP1P1-201ENST00000411909 902 ntBASIC14.26□□□□□ -0.13
CPNE4Q96A23 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.26□□□□□ -0.13
CPNE4Q96A23 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
CPNE4Q96A23 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms