Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 AL080243.2-201ENST00000418783 582 ntBASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 KLF2P3-201ENST00000451977 1087 ntBASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 SERBP1P3-201ENST00000459980 809 ntBASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 HLA-V-204ENST00000476601 1289 ntBASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 AC067863.1-201ENST00000494933 530 ntBASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 MIR6069-201ENST00000620069 79 ntBASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC65Q8IXS2 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 AC105250.1-201ENST00000509378 2057 ntBASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 AL607033.1-201ENST00000623900 1599 ntBASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 AC093028.1-201ENST00000622998 982 ntBASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 NORAD-201ENST00000565493 5339 ntBASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 AC063926.3-201ENST00000624734 5658 ntBASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC65Q8IXS2 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC65Q8IXS2 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 FO538757.1-201ENST00000623083 1397 ntBASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 AC067930.6-201ENST00000623257 4947 ntBASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 KRT18P28-201ENST00000453838 1332 ntBASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 RPL37AP1-201ENST00000412502 279 ntBASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 AC107890.1-201ENST00000422478 521 ntBASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 FAM86GP-201ENST00000448322 971 ntBASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 AC069120.2-201ENST00000524091 540 ntBASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 AC051619.7-201ENST00000568314 623 ntBASIC17.58■□□□□ 0.4
CCDC65Q8IXS2 SPDYE12P-201ENST00000618416 771 ntBASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms