Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 AC051619.7-201ENST00000568314 623 ntBASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
SYNE3Q6ZMZ3 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 EEF1DP4-201ENST00000446006 880 ntBASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 HLA-V-204ENST00000476601 1289 ntBASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 AC073592.8-201ENST00000624126 511 ntBASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.69■□□□□ 0.58
SYNE3Q6ZMZ3 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 SERBP1P3-201ENST00000459980 809 ntBASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 MIR6069-201ENST00000620069 79 ntBASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms