Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SLC25A6P2-201ENST00000497974 877 ntBASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 AC107918.2-201ENST00000530817 355 ntBASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 LINC02560-201ENST00000596379 459 ntBASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 AC008761.3-201ENST00000624803 892 ntBASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 AC010491.1-201ENST00000563101 2797 ntBASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 AC069224.1-201ENST00000566372 1715 ntBASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
PDLIM3Q53GG5 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 PTCHD3P3-201ENST00000403073 906 ntBASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 AC055876.3-201ENST00000431496 288 ntBASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 SLBP-205ENST00000488267 987 ntTSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 AC138649.4-201ENST00000612222 287 ntBASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 AC105339.1-204ENST00000636249 355 ntBASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
PDLIM3Q53GG5 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.25□□□□□ -0.29
PDLIM3Q53GG5 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms