Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MESTP3-201ENST00000503460 968 ntBASIC18.75■□□□□ 0.59
BRCA1P38398 AC090857.1-201ENST00000527400 390 ntBASIC18.75■□□□□ 0.59
BRCA1P38398 SAMD11P1-201ENST00000571429 661 ntBASIC18.75■□□□□ 0.59
BRCA1P38398 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC18.75■□□□□ 0.59
BRCA1P38398 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
BRCA1P38398 AL136301.1-201ENST00000615830 422 ntBASIC18.75■□□□□ 0.59
BRCA1P38398 Z98259.2-201ENST00000641583 609 ntBASIC18.75■□□□□ 0.59
BRCA1P38398 KRT8P21-201ENST00000430398 1491 ntBASIC18.74■□□□□ 0.59
BRCA1P38398 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
BRCA1P38398 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
BRCA1P38398 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.74■□□□□ 0.59
BRCA1P38398 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 AC055811.4-201ENST00000624039 1754 ntBASIC18.74■□□□□ 0.59
BRCA1P38398 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.74■□□□□ 0.59
BRCA1P38398 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
BRCA1P38398 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 IDS-203ENST00000428056 1213 ntTSL 2 BASIC18.74■□□□□ 0.59
BRCA1P38398 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC18.74■□□□□ 0.59
BRCA1P38398 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.74■□□□□ 0.59
BRCA1P38398 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC18.74■□□□□ 0.59
BRCA1P38398 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.74■□□□□ 0.59
BRCA1P38398 MIR4649-201ENST00000582839 64 ntBASIC18.74■□□□□ 0.59
BRCA1P38398 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC18.74■□□□□ 0.59
BRCA1P38398 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.74■□□□□ 0.59
BRCA1P38398 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC18.74■□□□□ 0.59
BRCA1P38398 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.74■□□□□ 0.59
BRCA1P38398 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.74■□□□□ 0.59
BRCA1P38398 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BRCA1P38398 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
BRCA1P38398 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 MIR648-201ENST00000385046 94 ntBASIC18.73■□□□□ 0.59
BRCA1P38398 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC18.73■□□□□ 0.59
BRCA1P38398 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 HLA-K-203ENST00000430151 1046 ntBASIC18.73■□□□□ 0.59
BRCA1P38398 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.73■□□□□ 0.59
BRCA1P38398 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC18.73■□□□□ 0.59
BRCA1P38398 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
BRCA1P38398 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC18.73■□□□□ 0.59
BRCA1P38398 AC074138.1-201ENST00000611182 1303 ntBASIC18.73■□□□□ 0.59
BRCA1P38398 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC18.73■□□□□ 0.59
BRCA1P38398 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
BRCA1P38398 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
BRCA1P38398 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.73■□□□□ 0.59
BRCA1P38398 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 OR2K2-202ENST00000374428 1038 ntBASIC18.73■□□□□ 0.59
BRCA1P38398 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC18.73■□□□□ 0.59
BRCA1P38398 TUBB8P8-201ENST00000458717 1058 ntBASIC18.73■□□□□ 0.59
BRCA1P38398 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC18.73■□□□□ 0.59
BRCA1P38398 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 FOS-204ENST00000554617 796 ntTSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BRCA1P38398 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.73■□□□□ 0.59
BRCA1P38398 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC18.73■□□□□ 0.59
BRCA1P38398 MIR6842-201ENST00000612539 65 ntBASIC18.73■□□□□ 0.59
BRCA1P38398 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
BRCA1P38398 AC007718.1-201ENST00000621078 280 ntBASIC18.73■□□□□ 0.59
BRCA1P38398 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BRCA1P38398 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
BRCA1P38398 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.72■□□□□ 0.59
BRCA1P38398 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
BRCA1P38398 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
BRCA1P38398 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
BRCA1P38398 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BRCA1P38398 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.72■□□□□ 0.59
BRCA1P38398 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC18.72■□□□□ 0.59
BRCA1P38398 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.72■□□□□ 0.59
BRCA1P38398 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
BRCA1P38398 HNRNPA1P36-201ENST00000521313 955 ntBASIC18.72■□□□□ 0.59
BRCA1P38398 AL022344.2-201ENST00000568976 968 ntBASIC18.72■□□□□ 0.59
BRCA1P38398 SNORD3B-2-202ENST00000571722 791 ntBASIC18.72■□□□□ 0.59
BRCA1P38398 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms