Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
SHMT2P34897 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.57■□□□□ 0.08
SHMT2P34897 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
SHMT2P34897 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.56■□□□□ 0.08
SHMT2P34897 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.56■□□□□ 0.08
SHMT2P34897 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.56■□□□□ 0.08
SHMT2P34897 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.56■□□□□ 0.08
SHMT2P34897 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.56■□□□□ 0.08
SHMT2P34897 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.56■□□□□ 0.08
SHMT2P34897 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.56■□□□□ 0.08
SHMT2P34897 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.56■□□□□ 0.08
SHMT2P34897 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.56■□□□□ 0.08
SHMT2P34897 AL590560.3-201ENST00000623350 461 ntBASIC15.56■□□□□ 0.08
SHMT2P34897 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.56■□□□□ 0.08
SHMT2P34897 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.56■□□□□ 0.08
SHMT2P34897 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
SHMT2P34897 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SHMT2P34897 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
SHMT2P34897 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.56■□□□□ 0.08
SHMT2P34897 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.56■□□□□ 0.08
SHMT2P34897 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
SHMT2P34897 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
SHMT2P34897 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHMT2P34897 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 AC022532.1-201ENST00000624563 1728 ntBASIC15.55■□□□□ 0.08
SHMT2P34897 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 AC087499.5-201ENST00000452760 1342 ntBASIC15.55■□□□□ 0.08
SHMT2P34897 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
SHMT2P34897 HMGN1P19-201ENST00000436976 333 ntBASIC15.55■□□□□ 0.08
SHMT2P34897 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 INGX-202ENST00000489074 768 ntBASIC15.55■□□□□ 0.08
SHMT2P34897 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.55■□□□□ 0.08
SHMT2P34897 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.55■□□□□ 0.08
SHMT2P34897 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.55■□□□□ 0.08
SHMT2P34897 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SHMT2P34897 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.55■□□□□ 0.08
SHMT2P34897 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.55■□□□□ 0.08
SHMT2P34897 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHMT2P34897 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms