Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGA1P17096 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HMGA1P17096 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGA1P17096 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGA1P17096 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HMGA1P17096 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HMGA1P17096 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.28■□□□□ 0.2
HMGA1P17096 AL355864.2-201ENST00000447420 863 ntBASIC16.28■□□□□ 0.2
HMGA1P17096 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 KLF2P4-201ENST00000451959 1225 ntBASIC16.28■□□□□ 0.2
HMGA1P17096 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.28■□□□□ 0.2
HMGA1P17096 BNIP3P42-201ENST00000454982 569 ntBASIC16.28■□□□□ 0.2
HMGA1P17096 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGA1P17096 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.28■□□□□ 0.2
HMGA1P17096 BNIP3P29-201ENST00000598302 571 ntBASIC16.28■□□□□ 0.2
HMGA1P17096 AC011447.5-201ENST00000616168 564 ntBASIC16.28■□□□□ 0.2
HMGA1P17096 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HMGA1P17096 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGA1P17096 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGA1P17096 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGA1P17096 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HMGA1P17096 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 LINC02199-201ENST00000506655 2702 ntBASIC16.27■□□□□ 0.2
HMGA1P17096 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.27■□□□□ 0.2
HMGA1P17096 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HMGA1P17096 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.27■□□□□ 0.2
HMGA1P17096 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
HMGA1P17096 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
HMGA1P17096 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.27■□□□□ 0.2
HMGA1P17096 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.27■□□□□ 0.2
HMGA1P17096 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.27■□□□□ 0.2
HMGA1P17096 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.27■□□□□ 0.2
HMGA1P17096 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.27■□□□□ 0.2
HMGA1P17096 RPL7P3-201ENST00000441388 714 ntBASIC16.27■□□□□ 0.2
HMGA1P17096 AC007551.1-201ENST00000457394 519 ntBASIC16.27■□□□□ 0.2
HMGA1P17096 FTH1P14-201ENST00000482930 551 ntBASIC16.27■□□□□ 0.2
HMGA1P17096 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.27■□□□□ 0.2
HMGA1P17096 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.27■□□□□ 0.2
HMGA1P17096 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.27■□□□□ 0.2
HMGA1P17096 AP001582.1-201ENST00000525856 295 ntBASIC16.27■□□□□ 0.2
HMGA1P17096 AP000812.2-201ENST00000538934 718 ntBASIC16.27■□□□□ 0.2
HMGA1P17096 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.27■□□□□ 0.2
HMGA1P17096 GNRHR2-203ENST00000581100 1187 ntBASIC16.27■□□□□ 0.2
HMGA1P17096 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.27■□□□□ 0.2
HMGA1P17096 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 AL033527.4-201ENST00000641026 673 ntBASIC16.27■□□□□ 0.2
HMGA1P17096 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HMGA1P17096 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGA1P17096 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGA1P17096 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HMGA1P17096 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
HMGA1P17096 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGA1P17096 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGA1P17096 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGA1P17096 AL138799.1-201ENST00000448213 1675 ntBASIC16.27■□□□□ 0.19
HMGA1P17096 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.27■□□□□ 0.19
HMGA1P17096 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.27■□□□□ 0.19
HMGA1P17096 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HMGA1P17096 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HMGA1P17096 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
HMGA1P17096 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.27■□□□□ 0.19
HMGA1P17096 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HMGA1P17096 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms