Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DQA1P01909 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 AL359881.3-201ENST00000602640 1721 ntBASIC12□□□□□ -0.49
HLA-DQA1P01909 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
HLA-DQA1P01909 LTBR-211ENST00000543190 785 ntTSL 3 BASIC12□□□□□ -0.49
HLA-DQA1P01909 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC12□□□□□ -0.49
HLA-DQA1P01909 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC12□□□□□ -0.49
HLA-DQA1P01909 AL138831.2-201ENST00000606564 490 ntBASIC12□□□□□ -0.49
HLA-DQA1P01909 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 AC107918.4-201ENST00000641966 3141 ntBASIC12□□□□□ -0.49
HLA-DQA1P01909 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC12□□□□□ -0.49
HLA-DQA1P01909 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HLA-DQA1P01909 AC005622.1-201ENST00000636801 1703 ntBASIC12□□□□□ -0.49
HLA-DQA1P01909 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12□□□□□ -0.49
HLA-DQA1P01909 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12□□□□□ -0.49
HLA-DQA1P01909 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 DMBT1P1-203ENST00000636837 4628 ntBASIC11.99□□□□□ -0.49
HLA-DQA1P01909 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 LINC01230-201ENST00000625222 3017 ntBASIC11.99□□□□□ -0.49
HLA-DQA1P01909 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 NME2-201ENST00000393183 568 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 LY6E-213ENST00000522528 606 ntTSL 3 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC11.99□□□□□ -0.49
HLA-DQA1P01909 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 HSPA7-201ENST00000445535 1927 ntBASIC11.99□□□□□ -0.49
HLA-DQA1P01909 MBLAC2-202ENST00000514906 1936 ntBASIC11.99□□□□□ -0.49
HLA-DQA1P01909 BX640514.1-201ENST00000583223 1918 ntBASIC11.99□□□□□ -0.49
HLA-DQA1P01909 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HLA-DQA1P01909 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms