Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TNFP01375 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.43■□□□□ 0.06
TNFP01375 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.43■□□□□ 0.06
TNFP01375 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.43■□□□□ 0.06
TNFP01375 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TNFP01375 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
TNFP01375 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.42■□□□□ 0.06
TNFP01375 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
TNFP01375 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.42■□□□□ 0.06
TNFP01375 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
TNFP01375 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
TNFP01375 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.42■□□□□ 0.06
TNFP01375 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.42■□□□□ 0.06
TNFP01375 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.42■□□□□ 0.06
TNFP01375 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.42■□□□□ 0.06
TNFP01375 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.42■□□□□ 0.06
TNFP01375 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.42■□□□□ 0.06
TNFP01375 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.42■□□□□ 0.06
TNFP01375 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 ACA64.2-201ENST00000459014 129 ntBASIC15.42■□□□□ 0.06
TNFP01375 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.42■□□□□ 0.06
TNFP01375 ENPP7P5-201ENST00000541031 1031 ntBASIC15.42■□□□□ 0.06
TNFP01375 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.42■□□□□ 0.06
TNFP01375 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.42■□□□□ 0.06
TNFP01375 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.42■□□□□ 0.06
TNFP01375 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.42■□□□□ 0.06
TNFP01375 AL121723.1-201ENST00000445194 1519 ntBASIC15.42■□□□□ 0.06
TNFP01375 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
TNFP01375 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
TNFP01375 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.42■□□□□ 0.06
TNFP01375 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TNFP01375 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.41■□□□□ 0.06
TNFP01375 INTS4P2-202ENST00000614726 2019 ntBASIC15.41■□□□□ 0.06
TNFP01375 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.41■□□□□ 0.06
TNFP01375 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TNFP01375 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 AC069224.1-201ENST00000566372 1715 ntBASIC15.41■□□□□ 0.06
TNFP01375 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
TNFP01375 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.41■□□□□ 0.06
TNFP01375 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
TNFP01375 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 SOCS2P1-201ENST00000417727 557 ntBASIC15.41■□□□□ 0.06
TNFP01375 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.41■□□□□ 0.06
TNFP01375 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.41■□□□□ 0.06
TNFP01375 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
TNFP01375 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TNFP01375 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.41■□□□□ 0.06
TNFP01375 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.41■□□□□ 0.06
TNFP01375 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
TNFP01375 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.4■□□□□ 0.06
TNFP01375 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.4■□□□□ 0.06
TNFP01375 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms