Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB2O43679 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.84■□□□□ 0.13
LDB2O43679 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDB2O43679 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
LDB2O43679 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB2O43679 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB2O43679 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.84■□□□□ 0.13
LDB2O43679 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB2O43679 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.84■□□□□ 0.13
LDB2O43679 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.84■□□□□ 0.13
LDB2O43679 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.84■□□□□ 0.13
LDB2O43679 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB2O43679 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.83■□□□□ 0.13
LDB2O43679 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB2O43679 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.83■□□□□ 0.13
LDB2O43679 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB2O43679 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB2O43679 Z97205.2-201ENST00000564697 1639 ntBASIC15.83■□□□□ 0.13
LDB2O43679 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB2O43679 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
LDB2O43679 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
LDB2O43679 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.83■□□□□ 0.13
LDB2O43679 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB2O43679 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
LDB2O43679 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB2O43679 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB2O43679 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.13
LDB2O43679 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.83■□□□□ 0.13
LDB2O43679 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB2O43679 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.83■□□□□ 0.12
LDB2O43679 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.83■□□□□ 0.12
LDB2O43679 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.83■□□□□ 0.12
LDB2O43679 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.83■□□□□ 0.12
LDB2O43679 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.83■□□□□ 0.12
LDB2O43679 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.83■□□□□ 0.12
LDB2O43679 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.83■□□□□ 0.12
LDB2O43679 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.83■□□□□ 0.12
LDB2O43679 AC097493.3-201ENST00000509725 367 ntBASIC15.83■□□□□ 0.12
LDB2O43679 AC027369.6-201ENST00000525520 931 ntBASIC15.83■□□□□ 0.12
LDB2O43679 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.83■□□□□ 0.12
LDB2O43679 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.83■□□□□ 0.12
LDB2O43679 AC010336.2-201ENST00000564226 506 ntBASIC15.83■□□□□ 0.12
LDB2O43679 AL158211.3-201ENST00000607385 239 ntBASIC15.83■□□□□ 0.12
LDB2O43679 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.83■□□□□ 0.12
LDB2O43679 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.83■□□□□ 0.12
LDB2O43679 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
LDB2O43679 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.83■□□□□ 0.12
LDB2O43679 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.83■□□□□ 0.12
LDB2O43679 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
LDB2O43679 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.83■□□□□ 0.12
LDB2O43679 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
LDB2O43679 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
LDB2O43679 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB2O43679 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
LDB2O43679 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.82■□□□□ 0.12
LDB2O43679 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
LDB2O43679 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.82■□□□□ 0.12
LDB2O43679 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.82■□□□□ 0.12
LDB2O43679 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 FER1L4-210ENST00000615531 5998 ntBASIC15.82■□□□□ 0.12
LDB2O43679 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LDB2O43679 TREML5P-201ENST00000421694 576 ntBASIC15.82■□□□□ 0.12
LDB2O43679 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.82■□□□□ 0.12
LDB2O43679 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.82■□□□□ 0.12
LDB2O43679 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
LDB2O43679 DUX4L27-201ENST00000554796 1261 ntBASIC15.82■□□□□ 0.12
LDB2O43679 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.82■□□□□ 0.12
LDB2O43679 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LDB2O43679 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.82■□□□□ 0.12
LDB2O43679 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LDB2O43679 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LDB2O43679 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms