Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL513477.1-201ENST00000602865 2407 ntBASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 AL022342.1-201ENST00000400363 863 ntBASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 AL645939.2-201ENST00000427340 991 ntBASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 AC022145.2-201ENST00000598203 171 ntBASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMCH1Q9UPQ0 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 AC126365.1-201ENST00000578585 1514 ntBASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMCH1Q9UPQ0 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 AZGP1P1-201ENST00000411909 902 ntBASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 AC136604.1-201ENST00000418535 575 ntBASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 AL671883.3-201ENST00000603274 991 ntBASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMCH1Q9UPQ0 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms